QC Plot

This plot shows DAPI reference overlaid on DAPI images.

QC Plot 1 QC Plot 2 Tile Size QC Plot

QC Plot

This plot shows the picked tile size for the images.

QC Plot QC Plot

QC Plot

This plot shows how the threshold is chosen based on the number of decoded vs FDR for all three chosen tiles.

QC Plot Interactive Decoding Plots

Gene Spot Counts in Starfish

Top 25 Genes by % Total Spots in Starfish

Bottom 25 Genes by % Total Spots in Starfish

Spot counts for Empty Barcodes in Starfish

Non-decoded PoSTcode spot counts

Gene Spot Counts in PoSTcode

Top 25 Genes by % Total Spots in PoSTcode

Bottom 25 Genes by % Total Spots in PoSTcode

Spot counts for Empty Barcodes in PoSTcode

Here is the summary of the PoSTcode decoding

#Detected #Decoded Percent FDR%
384737.0 315232.0 81.934412 0.156035

Here is the summary of the starfish decoding

#Detected #Decoded Percent FDR%
384737.0 298100.0 77.4815 0.339962

GeneExpression-DecodedByPoSTcode

GeneExpression-DecodedByStarfish

Postcode_Result

Starfish_Result